HL_8RW1_035

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8RW1|1|2|C|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RW1_035 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.4158

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8RW1|1|2|U|1394
8RW1|1|2|U|1395
8RW1|1|2|U|1396
8RW1|1|2|C|1397
8RW1|1|2|A|1398
8RW1|1|2|A|1399
8RW1|1|2|G|1400

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

KLLA0B01474p