HL_8RXH_006
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AACCCUUCAU
- Length
- 10 nucleotides
- Bulged bases
- 8RXH|1|L1|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_006 not in the Motif Atlas
- Geometric match to HL_5TBW_009
- Geometric discrepancy: 0.2132
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8RXH|1|L1|A|222
8RXH|1|L1|A|223
8RXH|1|L1|C|224
8RXH|1|L1|C|225
8RXH|1|L1|C|226
8RXH|1|L1|U|227
8RXH|1|L1|U|228
8RXH|1|L1|C|229
8RXH|1|L1|A|230
8RXH|1|L1|U|231
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain LT
- Putative 60S ribosomal protein L17
Coloring options: