8RXH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8RXH_001 | 1/L1/36:43 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_8RXH_002 | 1/L1/67:72 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8RXH_003 | 1/L1/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8RXH_004 | 1/L1/129:136 | No text annotation | ||
| HL_8RXH_005 | 1/L1/204:212 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_8RXH_006 | 1/L1/222:231 | Pseudoknot geometry | geometric HL_5TBW_009 NA | |
| HL_8RXH_007 | 1/L1/245:249 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_8RXH_008 | 1/L1/253:261 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_8RXH_009 | 1/L1/315:324 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8RXH_010 | 1/L1/341:350 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_8RXH_011 | 1/L1/397:402 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8RXH_012 | 1/L1/423:428 | GNRA | homologous HL_5TBW_011 NA | |
| HL_8RXH_013 | 1/L1/520:531 | No text annotation | ||
| HL_8RXH_128 | 1/L1/672:681 | T-loop with 2 stacked bulged bases | homologous HL_8P9A_126 HL_33597.3 | |
| HL_8RXH_016 | 1/L1/720:731 | No text annotation | ||
| HL_8RXH_017 | 1/L1/745:750 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8RXH_018 | 1/L1/758:764 | No text annotation | geometric HL_4WF9_007 HL_51020.2 | |
| HL_8RXH_019 | 1/L1/787:794 | No text annotation | ||
| HL_8RXH_020 | 1/L1/819:825 | UNCG | geometric HL_1NBS_006 HL_61337.4 | |
| HL_8RXH_021 | 1/L1/895:900 | GNRA | homologous HL_5TBW_019 NA | |
| HL_8RXH_129 | 1/L1/927:936 | No text annotation | homologous HL_8P9A_132 HL_50204.1 | |
| HL_8RXH_023 | 1/L1/961:969 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8RXH_024 | 1/L1/1009:1014 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8RXH_026 | 1/L1/1130:1136 | GNRA | geometric HL_4V9F_036 HL_34789.4 | |
| HL_8RXH_027 | 1/L1/1183:1189 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8RXH_028 | 1/L1/1205:1212 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_8RXH_031 | 1/L1/1492:1497 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8RXH_032 | 1/L1/1553:1574 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_8RXH_033 | 1/L1/1611:1617 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_8RXH_034 | 1/L1/1649:1656 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_005 NA | |
| HL_8RXH_036 | 1/L1/1749:1759 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8RXH_037 | 1/L2/27:34 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_8RXH_038 | 1/L2/45:51 | GNRA | homologous HL_8C3A_042 NA | |
| HL_8RXH_039 | 1/L2/107:112 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8RXH_041 | 1/L2/381:391 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_8RXH_042 | 1/L2/410:416 | GNRA variation | geometric HL_4QK9_001 HL_34789.4 | |
| HL_8RXH_130 | 1/L2/465:472 | GNRA with extra near cWW | geometric HL_9DE7_001 HL_87306.2 | |
| HL_8RXH_044 | 1/L2/499:509 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8RXH_045 | 1/L2/538:546 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8RXH_046 | 1/L2/615:624 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_8RXH_048 | 1/L2/794:799 | UNCG | geometric HL_4V9F_044 HL_61337.4 | |
| HL_8RXH_051 | 1/L2/1043:1051 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8RXH_131 | 1/L2/1060:1072 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_8RXH_053 | 1/L2/1100:1108 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8RXH_054 | 1/L2/1120:1127 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8RXH_132 | 1/L2/1152:1160 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8RXH_056 | 1/L2/1172:1177 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8RXH_133 | 1/L2/1213:1223 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_8RXH_058 | 1/L2/1278:1286 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_8RXH_059 | 1/L2/1335:1342 | No text annotation | geometric HL_5TBW_062 NA | |
| HL_8RXH_060 | 1/L2/1358:1364 | No text annotation | geometric HL_2ZNI_001 HL_75660.8 | |
| HL_8RXH_061 | 1/L2/1401:1406 | GNRA | homologous HL_5TBW_064 NA | |
| HL_8RXH_062 | 1/L2/1459:1465 | GNRA | geometric HL_4K50_001 HL_34789.4 | |
| HL_8RXH_064 | 1/L2/1509:1513 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_8RXH_134 | 1/L3/8:13 | GNRA | geometric HL_8C3A_036 NA | |
| HL_8RXH_066 | 1/L3/56:64 | No text annotation | geometric HL_5TBW_037 NA | |
| HL_8RXH_067 | 1/L3/118:126 | tRNA D-loop | geometric HL_6UFM_001 HL_04642.3 | |
| HL_8RXH_069 | 1/L4/7:17 | Pseudoknot geometry | geometric HL_3IGI_005 HL_52651.2 | |
| HL_8RXH_070 | 1/L4/53:58 | GNRA | geometric HL_5TBW_065 NA | |
| HL_8RXH_071 | 1/L4/96:101 | Ribsomal LSU H95 | geometric HL_4V9F_067 HL_12125.2 | |
| HL_8RXH_072 | 1/L4/137:153 | No text annotation | geometric HL_7A0S_074 NA | |
| HL_8RXH_073 | 1/L5/14:22 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_8RXH_075 | 1/L6/30:33 | Mini UNCG | geometric HL_4L8H_001 HL_90436.3 | |
| HL_8RXH_076 | 1/L6/38:41 | Mini UNCG | geometric HL_6MSF_002 HL_90436.3 | |
| HL_8RXH_077 | 1/L7/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_8RXH_078 | 1/L7/68:90 | No text annotation | ||
| HL_8RXH_079 | 1/L7/107:113 | No text annotation | homologous HL_8C3A_076 NA | |
| HL_8RXH_135 | 1/L8/36:49 | No text annotation | ||
| HL_8RXH_080 | 1/L8/40:45 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_8RXH_081 | 1/L8/90:95 | GNRA | homologous HL_8C3A_074 NA | |
| HL_8RXH_082 | 1/S1/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_8RXH_084 | 1/S1/159:165 | GNRA | geometric HL_5X2G_001 HL_34789.4 | |
| HL_8RXH_087 | 1/S1/291:298 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8RXH_089 | 1/S1/374:382 | GNRA related | homologous HL_8C3A_199 NA | |
| HL_8RXH_090 | 1/S1/411:416 | No text annotation | homologous HL_4V88_194 NA | |
| HL_8RXH_091 | 1/S1/436:447 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8RXH_092 | 1/S1/457:462 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8RXH_093 | 1/S1/493:504 | No text annotation | homologous HL_8C3A_203 NA | |
| HL_8RXH_095 | 1/S1/564:577 | No text annotation | ||
| HL_8RXH_096 | 1/S1/618:623 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8RXH_098 | 1/S1/813:821 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_8RXH_099 | 1/S1/865:873 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8RXH_100 | 1/S1/932:938 | No text annotation | geometric HL_4WF9_003 HL_75660.8 | |
| HL_8RXH_102 | 1/S1/1147:1156 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8RXH_103 | 1/S1/1184:1189 | GNRA | homologous HL_8C3A_212 NA | |
| HL_8RXH_104 | 1/S1/1244:1254 | No text annotation | homologous HL_4V88_208 NA | |
| HL_8RXH_106 | 1/S1/1434:1439 | GNRA | homologous HL_4V88_210 NA | |
| HL_8RXH_136 | 1/S1/1473:1478 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8RXH_108 | 1/S1/1540:1549 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_8RXH_109 | 1/S1/1590:1599 | T-loop related | geometric HL_3CUL_003 HL_87268.2 | |
| HL_8RXH_110 | 1/S1/1648:1653 | GNRA | geometric HL_4V9F_065 HL_34789.4 | |
| HL_8RXH_111 | 1/S1/1661:1668 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8RXH_113 | 1/S1/1796:1803 | No text annotation | geometric HL_6DTD_001 HL_89167.2 | |
| HL_8RXH_114 | 1/S1/1915:1924 | No text annotation | ||
| HL_8RXH_115 | 1/S1/1969:1980 | No text annotation | homologous HL_4V88_219 NA | |
| HL_8RXH_116 | 1/S1/2013:2023 | No text annotation | geometric HL_5J7L_029 NA | |
| HL_8RXH_118 | 1/S1/2181:2186 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_8RXH_119 | 1/S2/13:22 | No text annotation | homologous HL_4YYE_001 NA | |
| HL_8RXH_120 | 1/S2/31:39 | tRNA anticodon loop | homologous HL_6ORD_036 NA | |
| HL_8RXH_121 | 1/S2/52:61 | T-loop with 2 stacked bulged bases | homologous HL_2BTE_004 NA | |
| HL_8RXH_123 | 1/S3/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.3 | |
| HL_8RXH_124 | 1/S3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AH5_008 HL_33597.3 | |
| HL_8RXH_125 | 1/S4/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_8RXH_127 | 1/S4/53:61 | Externally structured | geometric HL_8C3A_022 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8RXH_014 | No text annotation | ||
| HL_8RXH_015 | No text annotation | ||
| HL_8RXH_022 | No text annotation | ||
| HL_8RXH_025 | tRNA anticodon loop | ||
| HL_8RXH_029 | No text annotation | ||
| HL_8RXH_030 | Mini UNCG | ||
| HL_8RXH_035 | No text annotation | ||
| HL_8RXH_040 | Mini UNCG | ||
| HL_8RXH_043 | No text annotation | ||
| HL_8RXH_047 | No text annotation | ||
| HL_8RXH_049 | No text annotation | ||
| HL_8RXH_050 | No text annotation | ||
| HL_8RXH_052 | No text annotation | ||
| HL_8RXH_055 | No text annotation | ||
| HL_8RXH_057 | No text annotation | ||
| HL_8RXH_063 | No text annotation | ||
| HL_8RXH_065 | tRNA anticodon loop | ||
| HL_8RXH_068 | No text annotation | ||
| HL_8RXH_074 | No text annotation | ||
| HL_8RXH_083 | No text annotation | ||
| HL_8RXH_085 | No text annotation | ||
| HL_8RXH_086 | No text annotation | ||
| HL_8RXH_088 | Mini UNCG | ||
| HL_8RXH_094 | No text annotation | ||
| HL_8RXH_097 | No text annotation | ||
| HL_8RXH_101 | No text annotation | ||
| HL_8RXH_105 | No text annotation | ||
| HL_8RXH_107 | tRNA anticodon loop | ||
| HL_8RXH_112 | No text annotation | ||
| HL_8RXH_117 | Externally structured | ||
| HL_8RXH_122 | tRNA D-loop | ||
| HL_8RXH_126 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8RXH_002 | 1/L1/6:7, 1/L7/163:165 | Single bulged U | geometric IL_7KVT_002 IL_97561.5 | |
| IL_8RXH_004 | 1/L1/11:12, 1/L7/156:159 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_8RXH_005 | 1/L1/25:26, 1/L1/54:56 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8RXH_006 | 1/L1/29:36, 1/L1/43:51 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_8RXH_007 | 1/L1/80:88, 1/L1/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_8RXH_009 | 1/L1/119:122, 1/L1/148:149 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
| IL_8RXH_296 | 1/L1/119:123, 1/L1/143:149 | No text annotation | ||
| IL_8RXH_010 | 1/L1/122:123, 1/L1/143:148 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_8RXH_011 | 1/L1/124:125, 1/L1/140:142 | Major groove intercalation | geometric IL_7RQB_072 NA | |
| IL_8RXH_012 | 1/L1/168:172, 1/L1/285:287 | Isolated non-canonical cWW pair | geometric IL_5B2P_002 IL_71625.3 | |
| IL_8RXH_013 | 1/L1/176:177, 1/L1/278:281 | Multiple bulged bases | geometric IL_3IGI_013 IL_44609.2 | |
| IL_8RXH_014 | 1/L1/179:181, 1/L1/272:276 | No text annotation | ||
| IL_8RXH_015 | 1/L1/190:192, 1/L1/241:242 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8RXH_017 | 1/L1/369:371, 1/L7/31:34 | Isolated cWS basepair | geometric IL_5TBW_057 NA | |
| IL_8RXH_019 | 1/L1/377:379, 1/L7/24:25 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8RXH_020 | 1/L1/408:410, 1/L7/19:20 | Single bulged U | geometric IL_2R8S_004 IL_97561.5 | |
| IL_8RXH_021 | 1/L1/417:420, 1/L1/431:444 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_8RXH_023 | 1/L1/445:450, 1/L7/13:18 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_8RXH_024 | 1/L1/468:471, 1/L1/662:665 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_8RXH_025 | 1/L1/475:478, 1/L1/656:658 | Isolated cWS basepair | geometric IL_4WF9_044 IL_42997.5 | |
| IL_8RXH_026 | 1/L1/482:483, 1/L1/650:652 | No text annotation | ||
| IL_8RXH_027 | 1/L1/483:486, 1/L1/647:650 | No text annotation | ||
| IL_8RXH_028 | 1/L1/487:489, 1/L1/645:646 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_8RXH_029 | 1/L1/497:499, 1/L1/561:565 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_8RXH_030 | 1/L1/501:506, 1/L1/549:559 | No text annotation | ||
| IL_8RXH_031 | 1/L1/508:509, 1/L1/545:547 | Single bulged G | geometric IL_3IGI_004 IL_28408.2 | |
| IL_8RXH_297 | 1/L1/510:513, 1/L1/538:544 | No text annotation | ||
| IL_8RXH_034 | 1/L1/581:587, 1/L1/622:625 | No text annotation | ||
| IL_8RXH_035 | 1/L1/588:589, 1/L1/619:621 | Major groove intercalation | geometric IL_5TBW_085 NA | |
| IL_8RXH_036 | 1/L1/591:592, 1/L1/615:617 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_8RXH_037 | 1/L1/592:595, 1/L1/612:615 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_8RXH_038 | 1/L1/595:597, 1/L1/608:612 | No text annotation | geometric IL_8C3A_508 NA | |
| IL_8RXH_042 | 1/L1/701:703, 1/L1/842:844 | Isolated non-canonical cWW pair | geometric IL_1U9S_007 IL_01003.4 | |
| IL_8RXH_043 | 1/L1/712:715, 1/L1/735:738 | No text annotation | ||
| IL_8RXH_335 | 1/L1/717:719, 1/L1/732:733 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_8RXH_046 | 1/L1/776:780, 1/L1/801:806 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_8RXH_047 | 1/L1/781:783, 1/L1/798:800 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.4 | |
| IL_8RXH_048 | 1/L1/813:814, 1/L1/830:832 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_8RXH_298 | 1/L1/854:856, 1/L1/989:991 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_8RXH_299 | 1/L1/856:860, 1/L1/982:989 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8RXH_051 | 1/L1/879:880, 1/L1/946:948 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_8RXH_052 | 1/L1/884:885, 1/L1/910:912 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8RXH_053 | 1/L1/885:889, 1/L1/906:910 | Triple sheared | geometric IL_5J7L_263 NA | |
| IL_8RXH_055 | 1/L1/891:893, 1/L1/902:904 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_8RXH_056 | 1/L1/920:923, 1/L1/939:941 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_8RXH_057 | 1/L1/924:926, 1/L1/937:938 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8RXH_058 | 1/L1/958:960, 1/L1/970:974 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8RXH_059 | 1/L1/995:996, 1/L1/1463:1465 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_8RXH_060 | 1/L1/1005:1007, 1/L1/1016:1018 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8RXH_061 | 1/L1/1020:1021, 1/L1/1168:1170 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8RXH_062 | 1/L1/1027:1033, 1/L1/1158:1162 | No text annotation | ||
| IL_8RXH_063 | 1/L1/1034:1036, 1/L1/1156:1157 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8RXH_064 | 1/L1/1043:1048, 1/L1/1103:1108 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_8RXH_065 | 1/L1/1048:1049, 1/L1/1101:1103 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8RXH_066 | 1/L1/1050:1055, 1/L1/1097:1100 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8RXH_300 | 1/L1/1057:1060, 1/L1/1092:1095 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_8RXH_068 | 1/L1/1060:1062, 1/L1/1090:1092 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_8RXH_069 | 1/L1/1121:1123, 1/L1/1142:1143 | Single bulged U | geometric IL_2PN3_003 IL_97561.5 | |
| IL_8RXH_070 | 1/L1/1127:1129, 1/L1/1137:1138 | Single bulged A | geometric IL_4P43_002 NA | |
| IL_8RXH_301 | 1/L1/1177:1179, 1/L1/1193:1195 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.4 | |
| IL_8RXH_073 | 1/L1/1224:1228, 1/L1/1398:1402 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_8RXH_074 | 1/L1/1230:1237, 1/L1/1387:1396 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8RXH_075 | 1/L1/1237:1240, 1/L1/1386:1387 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_8RXH_076 | 1/L1/1240:1243, 1/L1/1384:1386 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10892.2 | |
| IL_8RXH_077 | 1/L1/1246:1255, 1/L1/1376:1381 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8RXH_078 | 1/L1/1255:1267, 1/L1/1361:1376 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8RXH_079 | 1/L1/1269:1271, 1/L1/1358:1359 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_8RXH_080 | 1/L1/1275:1277, 1/L1/1352:1354 | No text annotation | geometric IL_2ZNI_001 NA | |
| IL_8RXH_081 | 1/L1/1412:1414, 1/L1/1450:1451 | No text annotation | ||
| IL_8RXH_082 | 1/L1/1418:1419, 1/L1/1440:1446 | Multiple bulged bases | geometric IL_6JXM_001 IL_05670.1 | |
| IL_8RXH_083 | 1/L1/1466:1468, 1/L1/1518:1521 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8RXH_085 | 1/L1/1475:1477, 1/L1/1509:1511 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_8RXH_086 | 1/L1/1477:1484, 1/L1/1505:1509 | Kink-turn | geometric IL_7RQB_047 NA | |
| IL_8RXH_087 | 1/L1/1484:1485, 1/L1/1503:1505 | Single bulged A | geometric IL_5TBW_024 NA | |
| IL_8RXH_088 | 1/L1/1487:1490, 1/L1/1499:1501 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_8RXH_303 | 1/L1/1534:1540, 1/L2/600:605 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8RXH_090 | 1/L1/1597:1600, 1/L2/18:19 | Major groove platform; stack outside cWW | geometric IL_5J7L_290 NA | |
| IL_8RXH_091 | 1/L1/1605:1610, 1/L1/1618:1621 | No text annotation | homologous IL_8C3A_066 NA | |
| IL_8RXH_092 | 1/L1/1638:1642, 1/L1/1735:1740 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_8RXH_093 | 1/L1/1643:1645, 1/L1/1732:1734 | Isolated non-canonical cWW pair | geometric IL_5UNE_004 IL_01003.4 | |
| IL_8RXH_095 | 1/L1/1677:1680, 1/L1/1712:1715 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_8RXH_304 | 1/L1/1681:1685, 1/L1/1707:1711 | Partly complementary | geometric IL_8D29_010 IL_71154.3 | |
| IL_8RXH_096 | 1/L1/1747:1748, 1/L1/1760:1765 | No text annotation | ||
| IL_8RXH_305 | 1/L1/1774:1777, 1/L2/5:8 | Tandem non-canonical cWW pairs | geometric IL_8C3A_437 NA | |
| IL_8RXH_336 | 1/L2/66:71, 1/L2/593:595 | No text annotation | ||
| IL_8RXH_100 | 1/L2/74:76, 1/L2/589:590 | No text annotation | ||
| IL_8RXH_102 | 1/L2/79:81, 1/L2/584:586 | Isolated tWW turn | geometric IL_4WF9_063 IL_10432.1 | |
| IL_8RXH_307 | 1/L2/82:85, 1/L2/582:583 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8RXH_308 | 1/L2/82:90, 1/L2/579:583 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_8RXH_104 | 1/L2/85:90, 1/L2/579:582 | Intercalated tWH | geometric IL_4V9F_062 IL_28217.1 | |
| IL_8RXH_105 | 1/L2/102:107, 1/L2/112:118 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 NA | |
| IL_8RXH_106 | 1/L2/124:126, 1/L2/354:356 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8RXH_107 | 1/L2/131:132, 1/L2/346:349 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_8RXH_309 | 1/L2/374:375, 1/L2/569:571 | Single bulged A | homologous IL_8P9A_310 IL_14190.2 | |
| IL_8RXH_110 | 1/L2/402:407, 1/L2/419:426 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8RXH_113 | 1/L2/442:445, 1/L2/491:492 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_8RXH_114 | 1/L2/446:447, 1/L2/487:490 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_8RXH_115 | 1/L2/450:456, 1/L2/481:484 | No text annotation | ||
| IL_8RXH_116 | 1/L2/457:462, 1/L2/475:480 | No text annotation | geometric IL_4V9F_057 IL_34822.1 | |
| IL_8RXH_119 | 1/L2/522:523, 1/L2/553:556 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_8RXH_310 | 1/L2/523:534, 1/L2/550:553 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8RXH_122 | 1/L2/637:640, 1/L2/1424:1426 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
| IL_8RXH_311 | 1/L2/642:644, 1/L2/1419:1422 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8RXH_312 | 1/L2/655:657, 1/L2/1249:1250 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8RXH_313 | 1/L2/658:659, 1/L2/1245:1248 | Minor groove platform | homologous IL_8P9A_322 IL_34520.3 | |
| IL_8RXH_128 | 1/L2/669:671, 1/L2/1031:1034 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8RXH_129 | 1/L2/682:685, 1/L2/754:757 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_8RXH_131 | 1/L2/690:693, 1/L2/745:749 | No text annotation | ||
| IL_8RXH_133 | 1/L2/766:772, 1/L2/1009:1013 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8RXH_134 | 1/L2/780:787, 1/L2/806:809 | No text annotation | geometric IL_8CRE_111 NA | |
| IL_8RXH_136 | 1/L2/812:815, 1/L2/961:964 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.2 | |
| IL_8RXH_137 | 1/L2/818:820, 1/L2/956:958 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_8RXH_139 | 1/L2/848:850, 1/L2/948:950 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.4 | |
| IL_8RXH_140 | 1/L2/1041:1042, 1/L2/1052:1054 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_8RXH_142 | 1/L2/1093:1095, 1/L2/1113:1117 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_8RXH_143 | 1/L2/1141:1148, 1/L2/1164:1169 | No text annotation | ||
| IL_8RXH_314 | 1/L2/1150:1152, 1/L2/1160:1162 | Isolated cWH basepair | geometric IL_5F5F_003 IL_10892.2 | |
| IL_8RXH_144 | 1/L2/1196:1198, 1/L2/1226:1227 | Single stack bend | geometric IL_7A0S_054 IL_15011.3 | |
| IL_8RXH_315 | 1/L2/1196:1211, 1/L2/1225:1227 | No text annotation | ||
| IL_8RXH_145 | 1/L2/1198:1211, 1/L2/1225:1226 | No text annotation | ||
| IL_8RXH_316 | 1/L2/1262:1264, 1/L2/1301:1303 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.4 | |
| IL_8RXH_317 | 1/L2/1264:1266, 1/L2/1300:1301 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_8RXH_146 | 1/L2/1266:1268, 1/L2/1296:1300 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_36931.2 | |
| IL_8RXH_147 | 1/L2/1273:1277, 1/L2/1287:1291 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8RXH_148 | 1/L2/1314:1315, 1/L2/1387:1389 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_8RXH_318 | 1/L2/1317:1319, 1/L2/1381:1385 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8RXH_150 | 1/L2/1319:1320, 1/L2/1378:1381 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8RXH_151 | 1/L2/1328:1330, 1/L2/1347:1351 | No text annotation | ||
| IL_8RXH_152 | 1/L2/1333:1335, 1/L2/1342:1344 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_01003.4 | |
| IL_8RXH_153 | 1/L2/1356:1358, 1/L2/1364:1366 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_8RXH_155 | 1/L2/1398:1399, 1/L2/1408:1410 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_8RXH_156 | 1/L2/1496:1498, 1/L2/1523:1525 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_01003.4 | |
| IL_8RXH_157 | 1/L2/1504:1507, 1/L2/1515:1517 | No text annotation | geometric IL_6ZDU_001 NA | |
| IL_8RXH_159 | 1/L3/23:26, 1/L3/211:212 | Minor groove platform | geometric IL_4LFB_045 IL_24264.1 | |
| IL_8RXH_319 | 1/L3/31:39, 1/L3/190:206 | No text annotation | ||
| IL_8RXH_160 | 1/L3/40:44, 1/L3/185:189 | UAA/GAN variation | geometric IL_2R8S_006 IL_45790.2 | |
| IL_8RXH_161 | 1/L3/46:47, 1/L3/181:183 | Single bulged U | geometric IL_6UFG_004 IL_97561.5 | |
| IL_8RXH_162 | 1/L3/70:74, 1/L3/147:152 | No text annotation | geometric IL_5TBW_071 NA | |
| IL_8RXH_163 | 1/L3/75:77, 1/L3/144:146 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 NA | |
| IL_8RXH_168 | 1/L3/153:156, 1/L3/174:177 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_8RXH_171 | 1/L4/30:31, 1/L4/173:175 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_8RXH_172 | 1/L4/31:35, 1/L4/167:173 | No text annotation | ||
| IL_8RXH_173 | 1/L4/46:53, 1/L4/58:64 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8RXH_175 | 1/L4/75:79, 1/L4/119:122 | C-loop | geometric IL_7RQB_104 NA | |
| IL_8RXH_176 | 1/L4/79:81, 1/L4/117:119 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_01003.4 | |
| IL_8RXH_177 | 1/L4/82:87, 1/L4/112:116 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8RXH_178 | 1/L4/91:92, 1/L4/105:108 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_8RXH_320 | 1/L4/131:136, 1/L4/154:159 | No text annotation | ||
| IL_8RXH_182 | 1/L5/34:36, 1/L5/110:120 | No text annotation | ||
| IL_8RXH_183 | 1/L5/37:39, 1/L5/103:109 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_8RXH_184 | 1/L5/40:46, 1/L5/97:102 | No text annotation | ||
| IL_8RXH_186 | 1/L5/65:69, 1/L5/89:93 | No text annotation | geometric IL_8GLP_204 IL_87767.2 | |
| IL_8RXH_187 | 1/L5/69:72, 1/L5/86:89 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.2 | |
| IL_8RXH_188 | 1/L6/10:11, 1/L6/46:70 | No text annotation | ||
| IL_8RXH_321 | 1/L7/42:44, 1/L7/99:101 | No text annotation | ||
| IL_8RXH_189 | 1/L7/64:65, 1/L7/93:95 | No text annotation | ||
| IL_8RXH_190 | 1/L7/121:126, 1/L7/137:142 | No text annotation | ||
| IL_8RXH_191 | 1/L7/127:129, 1/L7/134:136 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_8RXH_192 | 1/L8/11:13, 1/L8/114:116 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_8RXH_193 | 1/L8/19:20, 1/L8/66:68 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_8RXH_194 | 1/L8/25:31, 1/L8/56:61 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_8RXH_195 | 1/L8/32:33, 1/L8/52:55 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_8RXH_196 | 1/L8/36:40, 1/L8/45:49 | Symmetric double minor groove platform | homologous IL_4WF9_115 IL_58103.12 | |
| IL_8RXH_197 | 1/L8/75:82, 1/L8/102:108 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_8RXH_198 | 1/L8/86:89, 1/L8/96:98 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_8RXH_200 | 1/S1/24:26, 1/S1/649:650 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_8RXH_202 | 1/S1/37:41, 1/S1/514:519 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8RXH_203 | 1/S1/42:48, 1/S1/474:476 | No text annotation | homologous IL_8C3A_395 NA | |
| IL_8RXH_204 | 1/S1/50:52, 1/S1/471:472 | Minor groove platform | homologous IL_8C3A_396 NA | |
| IL_8RXH_205 | 1/S1/58:63, 1/S1/85:87 | No text annotation | homologous IL_4V88_389 NA | |
| IL_8RXH_206 | 1/S1/64:69, 1/S1/80:84 | No text annotation | homologous IL_4V88_390 NA | |
| IL_8RXH_207 | 1/S1/107:110, 1/S1/346:349 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_15225.2 | |
| IL_8RXH_208 | 1/S1/111:114, 1/S1/344:345 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8RXH_209 | 1/S1/115:119, 1/S1/340:343 | Minor groove platform related | geometric IL_5J7L_010 NA | |
| IL_8RXH_210 | 1/S1/148:154, 1/S1/170:177 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_8RXH_212 | 1/S1/198:199, 1/S1/226:228 | Single bulged U | geometric IL_3TZR_002 IL_97561.5 | |
| IL_8RXH_213 | 1/S1/239:240, 1/S1/307:311 | Multiple bulged bases | geometric IL_4V9F_021 IL_71421.3 | |
| IL_8RXH_214 | 1/S1/244:246, 1/S1/301:303 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.4 | |
| IL_8RXH_215 | 1/S1/321:322, 1/S1/325:328 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_8RXH_216 | 1/S1/355:360, 1/S1/392:399 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8RXH_217 | 1/S1/362:367, 1/S1/389:390 | No text annotation | homologous IL_8C3A_411 NA | |
| IL_8RXH_218 | 1/S1/371:373, 1/S1/383:385 | Isolated non-canonical cWW pair | geometric IL_5TBW_008 NA | |
| IL_8RXH_219 | 1/S1/406:408, 1/S1/419:424 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_8RXH_220 | 1/S1/432:434, 1/S1/449:451 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8RXH_322 | 1/S1/482:485, 1/S1/510:512 | Isolated cWH basepair | geometric IL_3R1C_011 IL_10892.2 | |
| IL_8RXH_222 | 1/S1/486:490, 1/S1/508:509 | C-loop | geometric IL_5J7L_018 NA | |
| IL_8RXH_223 | 1/S1/490:492, 1/S1/505:508 | Single bulged G, near cWW | geometric IL_6CZR_128 NA | |
| IL_8RXH_225 | 1/S1/561:562, 1/S1/579:585 | Multiple bulged bases | geometric IL_1FUF_002 NA | |
| IL_8RXH_337 | 1/S1/599:610, 1/S1/633:637 | No text annotation | ||
| IL_8RXH_227 | 1/S1/611:617, 1/S1/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_8RXH_228 | 1/S1/665:671, 1/S1/1456:1457 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8RXH_229 | 1/S1/676:680, 1/S1/1215:1219 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_8RXH_230 | 1/S1/690:700, 1/S1/746:755 | No text annotation | ||
| IL_8RXH_231 | 1/S1/846:848, 1/S1/903:907 | No text annotation | ||
| IL_8RXH_232 | 1/S1/852:860, 1/S1/892:899 | No text annotation | homologous IL_4V88_425 NA | |
| IL_8RXH_233 | 1/S1/861:864, 1/S1/874:891 | No text annotation | ||
| IL_8RXH_234 | 1/S1/921:924, 1/S1/962:965 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_71194.2 | |
| IL_8RXH_235 | 1/S1/929:931, 1/S1/939:957 | No text annotation | ||
| IL_8RXH_236 | 1/S1/977:978, 1/S1/1095:1097 | Single stack bend | geometric IL_4V9F_005 IL_15011.3 | |
| IL_8RXH_238 | 1/S1/994:996, 1/S1/1016:1018 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.4 | |
| IL_8RXH_239 | 1/S1/1111:1113, 1/S1/1208:1212 | No text annotation | ||
| IL_8RXH_240 | 1/S1/1114:1115, 1/S1/1205:1207 | Single bulged C | geometric IL_1S03_006 IL_05642.3 | |
| IL_8RXH_324 | 1/S1/1117:1120, 1/S1/1201:1203 | Isolated non-canonical cWW pair | homologous IL_8P9A_418 IL_01003.4 | |
| IL_8RXH_242 | 1/S1/1121:1125, 1/S1/1197:1200 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_8RXH_243 | 1/S1/1132:1136, 1/S1/1170:1174 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_8RXH_244 | 1/S1/1138:1140, 1/S1/1166:1168 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_8RXH_245 | 1/S1/1142:1146, 1/S1/1157:1164 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_8RXH_246 | 1/S1/1232:1237, 1/S1/1261:1263 | Other IL | geometric IL_4V88_435 NA | |
| IL_8RXH_247 | 1/S1/1237:1241, 1/S1/1257:1261 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8RXH_248 | 1/S1/1281:1283, 1/S1/1447:1453 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8RXH_249 | 1/S1/1288:1291, 1/S1/1412:1415 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
| IL_8RXH_252 | 1/S1/1367:1369, 1/S1/1401:1403 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_8RXH_253 | 1/S1/1463:1470, 1/S1/1481:1486 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8RXH_254 | 1/S1/1498:1499, 1/S1/2050:2052 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8RXH_325 | 1/S1/1501:1503, 1/S1/2047:2048 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8RXH_257 | 1/S1/1509:1512, 1/S1/2037:2041 | C-loop | geometric IL_1KOG_007 IL_63596.12 | |
| IL_8RXH_326 | 1/S1/1524:1526, 1/S1/1866:1868 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.4 | |
| IL_8RXH_259 | 1/S1/1530:1531, 1/S1/1860:1862 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8RXH_260 | 1/S1/1565:1567, 1/S1/1849:1851 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8RXH_262 | 1/S1/1582:1585, 1/S1/1604:1609 | No text annotation | ||
| IL_8RXH_263 | 1/S1/1586:1588, 1/S1/1601:1603 | No text annotation | geometric IL_4V88_448 NA | |
| IL_8RXH_327 | 1/S1/1620:1622, 1/S1/1841:1842 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8RXH_328 | 1/S1/1623:1628, 1/S1/1837:1840 | No text annotation | ||
| IL_8RXH_329 | 1/S1/1623:1630, 1/S1/1831:1840 | No text annotation | ||
| IL_8RXH_266 | 1/S1/1628:1630, 1/S1/1831:1837 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_8RXH_330 | 1/S1/1632:1633, 1/S1/1827:1829 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8RXH_268 | 1/S1/1642:1644, 1/S1/1675:1677 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_8RXH_270 | 1/S1/1693:1699, 1/S1/1776:1782 | No text annotation | ||
| IL_8RXH_271 | 1/S1/1701:1703, 1/S1/1772:1774 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_8RXH_272 | 1/S1/1705:1706, 1/S1/1768:1770 | Single bulged C | geometric IL_1S03_006 IL_05642.3 | |
| IL_8RXH_273 | 1/S1/1706:1707, 1/S1/1765:1768 | Multiple bulged bases | geometric IL_1FUF_003 NA | |
| IL_8RXH_274 | 1/S1/1707:1709, 1/S1/1763:1765 | Isolated cWH basepair | geometric IL_3R1C_032 NA | |
| IL_8RXH_275 | 1/S1/1793:1795, 1/S1/1804:1805 | Single bulged U | geometric IL_7KVT_002 IL_97561.5 | |
| IL_8RXH_276 | 1/S1/1877:1878, 1/S1/1948:1950 | Single bulged A | geometric IL_4AOB_001 IL_14190.2 | |
| IL_8RXH_277 | 1/S1/1878:1879, 1/S1/1946:1948 | Single bulged A | geometric IL_4R4V_003 IL_14190.2 | |
| IL_8RXH_331 | 1/S1/1881:1889, 1/S1/1935:1944 | No text annotation | ||
| IL_8RXH_280 | 1/S1/1959:1964, 1/S1/1985:1991 | No text annotation | geometric IL_4V88_462 NA | |
| IL_8RXH_281 | 1/S1/1965:1969, 1/S1/1980:1984 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_8RXH_282 | 1/S1/2056:2058, 1/S1/2167:2170 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_8RXH_332 | 1/S1/2058:2061, 1/S1/2163:2167 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_8RXH_284 | 1/S1/2062:2064, 1/S1/2160:2162 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_8RXH_285 | 1/S1/2064:2066, 1/S1/2157:2160 | Decoding loop related | geometric IL_5Z1I_002 NA | |
| IL_8RXH_287 | 1/S1/2073:2076, 1/S1/2147:2150 | Double sheared | geometric IL_4V88_468 NA | |
| IL_8RXH_288 | 1/S1/2076:2079, 1/S1/2144:2147 | No text annotation | ||
| IL_8RXH_333 | 1/S1/2081:2083, 1/S1/2140:2142 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.4 | |
| IL_8RXH_334 | 1/S1/2083:2085, 1/S1/2138:2140 | Isolated non-canonical cWW pair | homologous IL_8P9A_459 IL_71625.3 | |
| IL_8RXH_290 | 1/S1/2085:2087, 1/S1/2136:2138 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.4 | |
| IL_8RXH_291 | 1/S1/2088:2089, 1/S1/2133:2135 | Minor groove platform | geometric IL_4UYK_001 IL_34520.3 | |
| IL_8RXH_292 | 1/S1/2089:2091, 1/S1/2132:2133 | Minor groove platform | geometric IL_4LFB_004 IL_34520.3 | |
| IL_8RXH_293 | 1/S1/2095:2097, 1/S1/2126:2128 | Isolated non-canonical cWW pair | geometric IL_5ZTM_002 IL_71625.3 | |
| IL_8RXH_294 | 1/S1/2097:2101, 1/S1/2122:2126 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_8RXH_295 | 1/S1/2101:2103, 1/S1/2120:2122 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8RXH_001 | No text annotation | ||
| IL_8RXH_003 | Isolated non-canonical cWW pair | ||
| IL_8RXH_008 | Isolated non-canonical cWW pair | ||
| IL_8RXH_016 | Stack and bulge | ||
| IL_8RXH_018 | Tandem non-canonical cWW pairs | ||
| IL_8RXH_022 | Stack and bulge | ||
| IL_8RXH_032 | No text annotation | ||
| IL_8RXH_033 | Isolated cWH basepair | ||
| IL_8RXH_039 | Isolated cWH basepair | ||
| IL_8RXH_040 | Tandem non-canonical cWW pairs | ||
| IL_8RXH_041 | Isolated non-canonical cWW pair | ||
| IL_8RXH_044 | No text annotation | ||
| IL_8RXH_045 | Not an internal loop | ||
| IL_8RXH_049 | No text annotation | ||
| IL_8RXH_050 | Isolated non-canonical cWW pair | ||
| IL_8RXH_054 | Isolated non-canonical cWW pair | ||
| IL_8RXH_067 | No text annotation | ||
| IL_8RXH_071 | Tandem non-canonical cWW pairs | ||
| IL_8RXH_302 | No text annotation | ||
| IL_8RXH_072 | Tandem non-canonical cWW pairs | ||
| IL_8RXH_084 | Isolated non-canonical cWW pair | ||
| IL_8RXH_089 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_8RXH_094 | No text annotation | ||
| IL_8RXH_097 | No text annotation | ||
| IL_8RXH_098 | Not an internal loop | ||
| IL_8RXH_306 | No text annotation | ||
| IL_8RXH_099 | No text annotation | ||
| IL_8RXH_101 | Not an internal loop | ||
| IL_8RXH_103 | Major groove platform with extra pair | ||
| IL_8RXH_108 | Tandem non-canonical cWW pairs | ||
| IL_8RXH_109 | No text annotation | ||
| IL_8RXH_111 | Isolated cWS basepair | ||
| IL_8RXH_112 | Stack and bulge | ||
| IL_8RXH_117 | Not an internal loop | ||
| IL_8RXH_118 | Not an internal loop | ||
| IL_8RXH_120 | No text annotation | ||
| IL_8RXH_121 | Stack and bulge | ||
| IL_8RXH_123 | Isolated non-canonical cWW pair | ||
| IL_8RXH_124 | No text annotation | ||
| IL_8RXH_125 | Isolated non-canonical cWW pair | ||
| IL_8RXH_126 | No text annotation | ||
| IL_8RXH_127 | Isolated non-canonical cWW pair | ||
| IL_8RXH_130 | Isolated non-canonical cWW pair | ||
| IL_8RXH_132 | Isolated non-canonical cWW pair | ||
| IL_8RXH_135 | Stack and bulge | ||
| IL_8RXH_138 | No text annotation | ||
| IL_8RXH_141 | Isolated non-canonical cWW pair | ||
| IL_8RXH_149 | No text annotation | ||
| IL_8RXH_154 | No text annotation | ||
| IL_8RXH_158 | Isolated non-canonical cWW pair | ||
| IL_8RXH_164 | Isolated non-canonical cWW with bulges | ||
| IL_8RXH_165 | Isolated non-canonical cWW pair | ||
| IL_8RXH_166 | Isolated non-canonical cWW pair | ||
| IL_8RXH_167 | No text annotation | ||
| IL_8RXH_169 | Isolated non-canonical cWW pair | ||
| IL_8RXH_170 | Isolated cWH basepair | ||
| IL_8RXH_174 | Isolated non-canonical cWW pair | ||
| IL_8RXH_179 | Intercalated cWW | ||
| IL_8RXH_180 | Isolated non-canonical cWW pair | ||
| IL_8RXH_181 | No text annotation | ||
| IL_8RXH_185 | No text annotation | ||
| IL_8RXH_199 | Isolated non-canonical cWW pair | ||
| IL_8RXH_201 | Tandem non-canonical cWW pairs | ||
| IL_8RXH_211 | Single bulged U | ||
| IL_8RXH_221 | Isolated near basepair | ||
| IL_8RXH_323 | No text annotation | ||
| IL_8RXH_224 | Isolated non-canonical cWW pair | ||
| IL_8RXH_226 | No text annotation | ||
| IL_8RXH_237 | Isolated non-canonical cWW pair | ||
| IL_8RXH_241 | Tandem non-canonical cWW pairs | ||
| IL_8RXH_250 | Isolated non-canonical cWW pair | ||
| IL_8RXH_251 | No text annotation | ||
| IL_8RXH_255 | Intercalated cWW | ||
| IL_8RXH_256 | Not an internal loop | ||
| IL_8RXH_258 | No text annotation | ||
| IL_8RXH_261 | No text annotation | ||
| IL_8RXH_264 | Isolated non-canonical cWW pair | ||
| IL_8RXH_265 | No text annotation | ||
| IL_8RXH_267 | Isolated non-canonical cWW pair | ||
| IL_8RXH_269 | Isolated non-canonical cWW pair | ||
| IL_8RXH_278 | Isolated non-canonical cWW pair | ||
| IL_8RXH_279 | Isolated non-canonical cWW pair | ||
| IL_8RXH_283 | No text annotation | ||
| IL_8RXH_286 | Isolated non-canonical cWW pair | ||
| IL_8RXH_289 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8RXH_020 | 1/L1/185:190, 1/L1/242:252, 1/L1/262:268 | No text annotation | ||
| J3_8RXH_021 | 1/L1/194:201, 1/L1/215:221, 1/L1/232:239 | No text annotation | ||
| J3_8RXH_022 | 1/L1/380:396, 1/L1/403:408, 1/L7/20:23 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8RXH_023 | 1/L1/410:417, 1/L1/444:445, 1/L7/18:19 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_8RXH_024 | 1/L1/410:420, 1/L1/431:445, 1/L7/18:19 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8RXH_025 | 1/L1/492:494, 1/L1/568:577, 1/L1/629:642 | No text annotation | ||
| J3_8RXH_002 | 1/L1/865:871, 1/L1/956:958, 1/L1/974:977 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_8RXH_003 | 1/L1/880:883, 1/L1/913:918, 1/L1/943:946 | No text annotation | ||
| J3_8RXH_026 | 1/L1/1036:1038, 1/L1/1113:1119, 1/L1/1145:1156 | No text annotation | ||
| J3_8RXH_004 | 1/L1/1584:1590, 1/L2/40:42, 1/L2/54:57 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8RXH_005 | 1/L1/1593:1596, 1/L2/20:26, 1/L2/35:37 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_8RXH_027 | 1/L1/1631:1638, 1/L1/1740:1746, 1/L1/1766:1768 | No text annotation | ||
| J3_8RXH_028 | 1/L1/1645:1647, 1/L1/1658:1672, 1/L1/1728:1732 | No text annotation | ||
| J3_8RXH_006 | 1/L2/677:681, 1/L2/758:762, 1/L2/1017:1025 | No text annotation | ||
| J3_8RXH_029 | 1/L2/1078:1080, 1/L2/1182:1192, 1/L2/1231:1236 | No text annotation | ||
| J3_8RXH_007 | 1/L2/1091:1093, 1/L2/1117:1119, 1/L2/1128:1133 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_8RXH_008 | 1/L2/1324:1327, 1/L2/1352:1354, 1/L2/1368:1374 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8RXH_030 | 1/L5/10:11, 1/L5/25:31, 1/L5/123:128 | No text annotation | ||
| J3_8RXH_031 | 1/L6/13:26, 1/L6/37:38, 1/L6/41:44 | No text annotation | ||
| J3_8RXH_032 | 1/L7/44:45, 1/L7/58:64, 1/L7/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_8RXH_033 | 1/L8/13:18, 1/L8/69:70, 1/L8/113:114 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_8RXH_034 | 1/S1/41:42, 1/S1/476:482, 1/S1/512:514 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8RXH_035 | 1/S1/41:48, 1/S1/474:482, 1/S1/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_8RXH_036 | 1/S1/247:264, 1/S1/273:291, 1/S1/298:300 | No text annotation | ||
| J3_8RXH_037 | 1/S1/682:685, 1/S1/1106:1111, 1/S1/1212:1213 | No text annotation | ||
| J3_8RXH_038 | 1/S1/682:685, 1/S1/1106:1113, 1/S1/1208:1213 | No text annotation | ||
| J3_8RXH_009 | 1/S1/917:920, 1/S1/966:974, 1/S1/1100:1102 | No text annotation | ||
| J3_8RXH_039 | 1/S1/1130:1131, 1/S1/1175:1183, 1/S1/1190:1192 | No text annotation | geometric J3_4LFB_012 J3_74074.1 | |
| J3_8RXH_012 | 1/S1/1513:1516, 1/S1/2001:2007, 1/S1/2029:2036 | No text annotation | homologous J3_4V88_035 NA | |
| J3_8RXH_013 | 1/S1/1520:1523, 1/S1/1869:1871, 1/S1/1994:1997 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8RXH_040 | 1/S1/1532:1539, 1/S1/1550:1561, 1/S1/1855:1859 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8RXH_015 | 1/S1/1567:1573, 1/S1/1614:1619, 1/S1/1843:1849 | No text annotation | ||
| J3_8RXH_041 | 1/S1/1635:1640, 1/S1/1679:1684, 1/S1/1820:1825 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_8RXH_043 | 1/S1/1645:1646, 1/S1/1655:1659, 1/S1/1670:1674 | No text annotation | ||
| J3_8RXH_017 | 1/S1/1688:1690, 1/S1/1785:1790, 1/S1/1808:1816 | No text annotation | homologous J3_8P9A_083 J3_88233.1 | |
| J3_8RXH_018 | 1/S1/1871:1875, 1/S1/1952:1959, 1/S1/1991:1994 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_8RXH_019 | 1/S1/1889:1895, 1/S1/1906:1909, 1/S1/1930:1935 | No text annotation | ||
| J4_8RXH_001 | 1/L1/111:113, 1/L1/304:309, 1/L1/330:337, 1/L1/354:358 | No text annotation | ||
| J4_8RXH_002 | 1/L1/185:190, 1/L1/242:245, 1/L1/249:252, 1/L1/262:268 | No text annotation | ||
| J4_8RXH_003 | 1/L1/1541:1547, 1/L1/1580:1581, 1/L2/60:63, 1/L2/598:599 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_8RXH_004 | 1/L1/1597:1601, 1/L1/1625:1630, 1/L1/1769:1770, 1/L2/12:19 | No text annotation | ||
| J4_8RXH_005 | 1/L1/1600:1601, 1/L1/1625:1630, 1/L1/1769:1770, 1/L2/12:18 | No text annotation | ||
| J4_8RXH_006 | 1/L2/90:98, 1/L2/122:123, 1/L2/357:368, 1/L2/577:579 | No text annotation | ||
| J4_8RXH_007 | 1/L2/376:380, 1/L2/392:396, 1/L2/432:436, 1/L2/563:568 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8RXH_008 | 1/L2/438:440, 1/L2/494:495, 1/L2/513:522, 1/L2/556:561 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8RXH_009 | 1/L2/775:780, 1/L2/809:812, 1/L2/964:981, 1/L2/1003:1006 | No text annotation | ||
| J4_8RXH_010 | 1/L2/775:780, 1/L2/809:815, 1/L2/961:981, 1/L2/1003:1006 | No text annotation | ||
| J4_8RXH_011 | 1/L2/1081:1085, 1/L2/1139:1141, 1/L2/1169:1170, 1/L2/1179:1181 | No text annotation | ||
| J4_8RXH_012 | 1/L4/37:40, 1/L4/70:71, 1/L4/126:128, 1/L4/162:165 | No text annotation | ||
| J4_8RXH_013 | 1/S1/97:105, 1/S1/351:353, 1/S1/401:404, 1/S1/426:427 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_8RXH_014 | 1/S1/671:673, 1/S1/1222:1227, 1/S1/1268:1279, 1/S1/1455:1456 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_8RXH_015 | 1/S2/6:10, 1/S2/25:27, 1/S2/43:52, 1/S2/61:67 | No text annotation | ||
| J4_8RXH_016 | 1/S3/7:10, 1/S3/25:27, 1/S3/43:49, 1/S3/65:66 | tRNA junction | homologous J4_7EQJ_002 J4_95067.1 | |
| J4_8RXH_017 | 1/S4/7:10, 1/S4/25:27, 1/S4/43:49, 1/S4/65:66 | tRNA junction | homologous J4_3TUP_001 J4_95067.1 | |
| J5_8RXH_001 | 1/L1/18:20, 1/L7/35:42, 1/L7/101:106, 1/L7/114:115, 1/L7/148:150 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_8RXH_002 | 1/L1/690:695, 1/L1/850:854, 1/L1/991:995, 1/L1/1465:1466, 1/L1/1521:1527 | No text annotation | ||
| J5_8RXH_003 | 1/L2/645:652, 1/L2/1253:1262, 1/L2/1303:1314, 1/L2/1389:1395, 1/L2/1413:1418 | No text annotation | ||
| J5_8RXH_004 | 1/L2/662:665, 1/L2/1038:1041, 1/L2/1054:1055, 1/L2/1077:1078, 1/L2/1236:1242 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_8RXH_007 | 1/S1/31:35, 1/S1/521:526, 1/S1/555:561, 1/S1/585:595, 1/S1/641:644 | No text annotation | ||
| J5_8RXH_006 | 1/S1/54:57, 1/S1/88:95, 1/S1/429:431, 1/S1/452:454, 1/S1/465:469 | No text annotation | homologous J5_8C3A_020 NA | |
| J6_8RXH_001 | 1/L1/20:25, 1/L1/56:66, 1/L1/73:77, 1/L1/105:110, 1/L1/359:369, 1/L7/34:35 | No text annotation | ||
| J6_8RXH_002 | 1/L1/707:710, 1/L1/740:744, 1/L1/751:754, 1/L1/768:772, 1/L1/810:811, 1/L1/834:838 | No text annotation | ||
| J6_8RXH_003 | 1/L2/662:665, 1/L2/1038:1041, 1/L2/1054:1055, 1/L2/1077:1080, 1/L2/1182:1192, 1/L2/1231:1242 | No text annotation | ||
| J6_8RXH_004 | 1/S1/120:129, 1/S1/143:147, 1/S1/178:189, 1/S1/236:238, 1/S1/312:317, 1/S1/332:339 | No text annotation | ||
| J7_8RXH_001 | 1/L1/1000:1005, 1/L1/1018:1019, 1/L1/1171:1174, 1/L1/1198:1203, 1/L1/1214:1218, 1/L1/1408:1409, 1/L1/1454:1459 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8RXH_001 | No text annotation | ||
| J3_8RXH_010 | No text annotation | ||
| J3_8RXH_011 | No text annotation | ||
| J3_8RXH_014 | No text annotation | ||
| J3_8RXH_016 | No text annotation | ||
| J3_8RXH_042 | No text annotation | ||
| J5_8RXH_005 | No text annotation |
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