HL_8RXH_010
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GGUAUUUGUC
- Length
- 10 nucleotides
- Bulged bases
- 8RXH|1|L1|G|342, 8RXH|1|L1|U|343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_010 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.1657
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8RXH|1|L1|G|341
8RXH|1|L1|G|342
8RXH|1|L1|U|343
8RXH|1|L1|A|344
8RXH|1|L1|U|345
8RXH|1|L1|U|346
8RXH|1|L1|U|347
8RXH|1|L1|G|348
8RXH|1|L1|U|349
8RXH|1|L1|C|350
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain LM
- Ribosomal protein L15
- Chain Li
- Putative 60S Ribosomal protein L36
- Chain Lp
- Putative 60S ribosomal protein L44
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