HL_8RXH_020
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CUCCGUG
- Length
- 7 nucleotides
- Bulged bases
- 8RXH|1|L1|C|821, 8RXH|1|L1|U|824
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_020 not in the Motif Atlas
- Geometric match to HL_1NBS_006
- Geometric discrepancy: 0.2729
- The information below is about HL_1NBS_006
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_61337.4
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 63
Unit IDs
8RXH|1|L1|C|819
8RXH|1|L1|U|820
8RXH|1|L1|C|821
8RXH|1|L1|C|822
8RXH|1|L1|G|823
8RXH|1|L1|U|824
8RXH|1|L1|G|825
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LO
- Putative 60S ribosomal protein L5
- Chain Lb
- 60S ribosomal protein L29
- Chain Lp
- Putative 60S ribosomal protein L44
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