HL_8RXH_026

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CCAACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_026 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.147

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8RXH|1|L1|C|1130
8RXH|1|L1|C|1131
8RXH|1|L1|A|1132
8RXH|1|L1|A|1133
8RXH|1|L1|C|1134
8RXH|1|L1|U|1135
8RXH|1|L1|G|1136

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LO

Putative 60S ribosomal protein L5

Chain Lb

60S ribosomal protein L29