HL_8RXH_034
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GUUAUAUC
- Length
- 8 nucleotides
- Bulged bases
- 8RXH|1|L1|U|1655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_034 not in the Motif Atlas
- Geometric match to HL_5TBW_005
- Geometric discrepancy: 0.2996
- The information below is about HL_5TBW_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8RXH|1|L1|G|1649
8RXH|1|L1|U|1650
8RXH|1|L1|U|1651
8RXH|1|L1|A|1652
8RXH|1|L1|U|1653
8RXH|1|L1|A|1654
8RXH|1|L1|U|1655
8RXH|1|L1|C|1656
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- Ribosomal protein L15
- Chain Lj
- Ribosomal protein L37
Coloring options: