HL_8RXH_053

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_053 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2035

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8RXH|1|L2|A|1100
8RXH|1|L2|A|1101
8RXH|1|L2|C|1102
8RXH|1|L2|A|1103
8RXH|1|L2|G|1104
8RXH|1|L2|A|1105
8RXH|1|L2|A|1106
8RXH|1|L2|A|1107
8RXH|1|L2|U|1108

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain LD

60S ribosomal protein L11