HL_8RXH_054
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CACAAGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_054 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.1251
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8RXH|1|L2|C|1120
8RXH|1|L2|A|1121
8RXH|1|L2|C|1122
8RXH|1|L2|A|1123
8RXH|1|L2|A|1124
8RXH|1|L2|G|1125
8RXH|1|L2|C|1126
8RXH|1|L2|G|1127
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LN
- Putative 60S ribosomal protein L10
- Chain LS
- Putative 60S ribosomal protein L21
- Chain Lp
- Putative 60S ribosomal protein L44
- Chain S3
- Transfer RNA; tRNA
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