HL_8RXH_056

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_056 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1286

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RXH|1|L2|C|1172
8RXH|1|L2|G|1173
8RXH|1|L2|A|1174
8RXH|1|L2|A|1175
8RXH|1|L2|A|1176
8RXH|1|L2|G|1177

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain LO

Putative 60S ribosomal protein L5

Chain LS

Putative 60S ribosomal protein L21