HL_8RXH_060

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_060 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3189

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8RXH|1|L2|U|1358
8RXH|1|L2|OMU|1359
8RXH|1|L2|OMG|1360
8RXH|1|L2|PSU|1361
8RXH|1|L2|U|1362
8RXH|1|L2|C|1363
8RXH|1|L2|A|1364

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain LB

Putative ribosomal protein L3

Chain S2

Transfer RNA; tRNA