HL_8RXH_061

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CG(PSU)GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_061 not in the Motif Atlas

Homologous match to HL_5TBW_064

Geometric discrepancy: 0.2529

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RXH|1|L2|C|1401
8RXH|1|L2|G|1402
8RXH|1|L2|PSU|1403
8RXH|1|L2|G|1404
8RXH|1|L2|A|1405
8RXH|1|L2|G|1406

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LA

Putative 60S ribosomal protein L2

Chain S3

Transfer RNA; tRNA