HL_8RXH_069
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UUGUGAAGGGA
- Length
- 11 nucleotides
- Bulged bases
- 8RXH|1|L4|U|8, 8RXH|1|L4|G|9, 8RXH|1|L4|U|10
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_069 not in the Motif Atlas
- Geometric match to HL_3IGI_005
- Geometric discrepancy: 0.3283
- The information below is about HL_3IGI_005
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
8RXH|1|L4|U|7
8RXH|1|L4|U|8
8RXH|1|L4|G|9
8RXH|1|L4|U|10
8RXH|1|L4|G|11
8RXH|1|L4|A|12
8RXH|1|L4|A|13
8RXH|1|L4|G|14
8RXH|1|L4|G|15
8RXH|1|L4|G|16
8RXH|1|L4|A|17
Current chains
- Chain L4
- SR2_chain_4
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LT
- Putative 60S ribosomal protein L17
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