HL_8RXH_084

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

8RXH|1|S1|C|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_084 not in the Motif Atlas

Geometric match to HL_5X2G_001

Geometric discrepancy: 0.099

The information below is about HL_5X2G_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8RXH|1|S1|C|159
8RXH|1|S1|G|160
8RXH|1|S1|A|161
8RXH|1|S1|A|162
8RXH|1|S1|A|163
8RXH|1|S1|C|164
8RXH|1|S1|G|165

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SZ

40S ribosomal protein S24