HL_8RXH_093

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAAAACAAAACG

Length

12 nucleotides

Bulged bases

8RXH|1|S1|A|495, 8RXH|1|S1|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_093 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.3356

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8RXH|1|S1|C|493
8RXH|1|S1|A|494
8RXH|1|S1|A|495
8RXH|1|S1|A|496
8RXH|1|S1|A|497
8RXH|1|S1|C|498
8RXH|1|S1|A|499
8RXH|1|S1|A|500
8RXH|1|S1|A|501
8RXH|1|S1|A|502
8RXH|1|S1|C|503
8RXH|1|S1|G|504

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SZ

40S ribosomal protein S24