HL_8RXH_094

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUUUGUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_094 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3074

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RXH|1|S1|G|531
8RXH|1|S1|U|532
8RXH|1|S1|U|546
8RXH|1|S1|U|547
8RXH|1|S1|G|548
8RXH|1|S1|U|549
8RXH|1|S1|C|550

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain Se

40S ribosomal protein S30