HL_8RXH_100

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGUUUCG

Length

7 nucleotides

Bulged bases

8RXH|1|S1|U|935, 8RXH|1|S1|U|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_100 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.0966

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8RXH|1|S1|C|932
8RXH|1|S1|G|933
8RXH|1|S1|U|934
8RXH|1|S1|U|935
8RXH|1|S1|U|936
8RXH|1|S1|C|937
8RXH|1|S1|G|938

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain SU

Ribosomal protein S17 family protein