HL_8RXH_103

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_103 not in the Motif Atlas

Homologous match to HL_8C3A_212

Geometric discrepancy: 0.0733

The information below is about HL_8C3A_212

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8RXH|1|S1|C|1184
8RXH|1|S1|G|1185
8RXH|1|S1|A|1186
8RXH|1|S1|A|1187
8RXH|1|S1|G|1188
8RXH|1|S1|G|1189

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain ST

Putative 40S ribosomal protein S13

Chain Sb

40S ribosomal protein S26