HL_8RXH_110

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_110 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0775

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8RXH|1|S1|A|1648
8RXH|1|S1|G|1649
8RXH|1|S1|U|1650
8RXH|1|S1|G|1651
8RXH|1|S1|A|1652
8RXH|1|S1|U|1653

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SB

40S ribosomal protein SA

Chain SF

40S ribosomal protein S2