HL_8RXH_112
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UUGCCCAUAGGAUAGCGCA
- Length
- 19 nucleotides
- Bulged bases
- 8RXH|1|S1|C|1715, 8RXH|1|S1|U|1717, 8RXH|1|S1|A|1718, 8RXH|1|S1|C|1725
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_112 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.2922
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.9
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8RXH|1|S1|U|1710
8RXH|1|S1|U|1711
8RXH|1|S1|G|1712
8RXH|1|S1|C|1713
8RXH|1|S1|C|1714
8RXH|1|S1|C|1715
8RXH|1|S1|A|1716
8RXH|1|S1|U|1717
8RXH|1|S1|A|1718
8RXH|1|S1|G|1719
8RXH|1|S1|G|1720
8RXH|1|S1|A|1721
8RXH|1|S1|U|1722
8RXH|1|S1|A|1723
8RXH|1|S1|G|1724
8RXH|1|S1|C|1725
8RXH|1|S1|G|1760
8RXH|1|S1|C|1761
8RXH|1|S1|A|1762
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SH
- 40S ribosomal protein S5
- Chain SL
- Putative 40S ribosomal protein S16
- Chain SX
- 40S ribosomal protein S19-like protein
- Chain Sa
- 40S ribosomal protein S25
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