HL_8RXH_113

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UAAUUGCA

Length

8 nucleotides

Bulged bases

8RXH|1|S1|U|1799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_113 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.2205

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8RXH|1|S1|U|1796
8RXH|1|S1|A|1797
8RXH|1|S1|A|1798
8RXH|1|S1|U|1799
8RXH|1|S1|U|1800
8RXH|1|S1|G|1801
8RXH|1|S1|C|1802
8RXH|1|S1|A|1803

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SV

Putative 40S ribosomal protein S17

Chain Sd

Putative 40S ribosomal protein S33