HL_8RXH_128
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- (PSU)CUUGA(A2M)AC(A2M)
- Length
- 10 nucleotides
- Bulged bases
- 8RXH|1|L1|C|680
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_128 not in the Motif Atlas
- Homologous match to HL_8P9A_126
- Geometric discrepancy: 0.2206
- The information below is about HL_8P9A_126
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8RXH|1|L1|PSU|672
8RXH|1|L1|C|673
8RXH|1|L1|U|674
8RXH|1|L1|U|675
8RXH|1|L1|G|676
8RXH|1|L1|A|677
8RXH|1|L1|A2M|678
8RXH|1|L1|A|679
8RXH|1|L1|C|680
8RXH|1|L1|A2M|681
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LB
- Putative ribosomal protein L3
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain Lf
- 60S ribosomal protein L32
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