HL_8RXH_134

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGUAA(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_134 not in the Motif Atlas

Geometric match to HL_8C3A_036

Geometric discrepancy: 0.1147

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RXH|1|L3|G|8
8RXH|1|L3|G|9
8RXH|1|L3|U|10
8RXH|1|L3|A|11
8RXH|1|L3|A|12
8RXH|1|L3|OMU|13

Current chains

Chain L3

SR1_chain_3

Nearby chains

Chain LY

60S ribosomal protein L27

Chain Lh

Putative 60S ribosomal protein L34