HL_8S8D_014

3D structure

PDB id

8S8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8S8D|1|2|A|415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8D_014 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.1854

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

8S8D|1|2|C|413
8S8D|1|2|C|414
8S8D|1|2|A|415
8S8D|1|2|A|416
8S8D|1|2|G|417
8S8D|1|2|G|418

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6