HL_8S8G_001

3D structure

PDB id

8S8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAG(H2U)GGAAG

Length

9 nucleotides

Bulged bases

8S8G|1|1|G|18, 8S8G|1|1|G|19, 8S8G|1|1|A|20, 8S8G|1|1|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8G_001 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1649

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11447.1

Basepair signature

cWW

Number of instances in this motif group

2

Unit IDs

8S8G|1|1|C|13
8S8G|1|1|A|14
8S8G|1|1|G|15
8S8G|1|1|H2U|16
8S8G|1|1|G|18
8S8G|1|1|G|19
8S8G|1|1|A|20
8S8G|1|1|A|21
8S8G|1|1|G|22

Current chains

Chain 1

Met-tRNAi

Nearby chains

Chain j

Eukaryotic translation initiation factor 2 subunit alpha