HL_8S8H_027

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUUCUUAUG

Length

10 nucleotides

Bulged bases

8S8H|1|2|U|1056, 8S8H|1|2|U|1057, 8S8H|1|2|C|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8H_027 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.4389

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8S8H|1|2|U|1054
8S8H|1|2|U|1055
8S8H|1|2|U|1056
8S8H|1|2|U|1057
8S8H|1|2|C|1058
8S8H|1|2|U|1059
8S8H|1|2|U|1060
8S8H|1|2|A|1061
8S8H|1|2|U|1062
8S8H|1|2|G|1063

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain R

KLLA0B01474p

Chain b

40S ribosomal protein S27