HL_8S8H_037
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8S8H|1|2|U|1555, 8S8H|1|2|U|1556, 8S8H|1|2|A|1557
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8H_037 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.125
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8S8H|1|2|A|1548
8S8H|1|2|U|1549
8S8H|1|2|U|1550
8S8H|1|2|G|1551
8S8H|1|2|U|1552
8S8H|1|2|A|1553
8S8H|1|2|A|1554
8S8H|1|2|U|1555
8S8H|1|2|U|1556
8S8H|1|2|A|1557
8S8H|1|2|U|1558
8S8H|1|2|U|1559
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain P
- KLLA0F07843p
- Chain S
- KLLA0B01562p
- Chain T
- KLLA0A07194p
- Chain d
- Small ribosomal subunit protein uS14
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