HL_8S8J_002
3D structure
- PDB id
- 8S8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCUCAU(T6A)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8J_002 not in the Motif Atlas
- Homologous match to HL_4V8N_144
- Geometric discrepancy: 0.1732
- The information below is about HL_4V8N_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8S8J|1|1|G|31
8S8J|1|1|C|32
8S8J|1|1|U|33
8S8J|1|1|C|34
8S8J|1|1|A|35
8S8J|1|1|U|36
8S8J|1|1|T6A|37
8S8J|1|1|A|38
8S8J|1|1|C|39
Current chains
- Chain 1
- Met-tRNAi
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain Q
- Small ribosomal subunit protein uS9
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain m
- Eukaryotic translation initiation factor 5
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