HL_8S8K_016

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8S8K|1|2|A|491, 8S8K|1|2|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8K_016 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.342

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8S8K|1|2|C|490
8S8K|1|2|A|491
8S8K|1|2|U|492
8S8K|1|2|U|493
8S8K|1|2|C|494
8S8K|1|2|G|495

Current chains

Chain 2

18S ribosomal RNA

Nearby chains