HL_8S8K_020

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUCCUUGUGGG

Length

11 nucleotides

Bulged bases

8S8K|1|2|U|721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8K_020 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3486

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8S8K|1|2|C|714
8S8K|1|2|U|715
8S8K|1|2|C|716
8S8K|1|2|C|717
8S8K|1|2|U|718
8S8K|1|2|U|719
8S8K|1|2|G|720
8S8K|1|2|U|721
8S8K|1|2|G|722
8S8K|1|2|G|723
8S8K|1|2|G|724

Current chains

Chain 2

18S ribosomal RNA

Nearby chains