HL_8S8K_030
3D structure
- PDB id
- 8S8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8S8K|1|2|A|1195
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8K_030 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.2336
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8S8K|1|2|G|1187
8S8K|1|2|A|1188
8S8K|1|2|C|1189
8S8K|1|2|B8N|1190
8S8K|1|2|C|1191
8S8K|1|2|A|1192
8S8K|1|2|A|1193
8S8K|1|2|C|1194
8S8K|1|2|A|1195
8S8K|1|2|C|1196
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain Q
- Small ribosomal subunit protein uS9
- Chain T
- KLLA0A07194p
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
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