HL_8S8K_033

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8S8K|1|2|U|1313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8K_033 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.128

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8S8K|1|2|C|1308
8S8K|1|2|U|1309
8S8K|1|2|U|1310
8S8K|1|2|A|1311
8S8K|1|2|A|1312
8S8K|1|2|U|1313
8S8K|1|2|U|1314
8S8K|1|2|G|1315

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

KLLA0D10659p

Chain R

KLLA0B01474p