HL_8S8K_035

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8K_035 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.3808

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8S8K|1|2|U|1394
8S8K|1|2|U|1395
8S8K|1|2|U|1396
8S8K|1|2|C|1397
8S8K|1|2|A|1398
8S8K|1|2|A|1399
8S8K|1|2|G|1400

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

KLLA0B01474p

Chain c

Small ribosomal subunit protein eS28