HL_8SCB_024

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUCCAGUCCG

Length

11 nucleotides

Bulged bases

8SCB|1|5|C|1437

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_024 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3037

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8SCB|1|5|C|1436
8SCB|1|5|C|1437
8SCB|1|5|U|1440
8SCB|1|5|C|1441
8SCB|1|5|C|1442
8SCB|1|5|A|1443
8SCB|1|5|G|1444
8SCB|1|5|U|1445
8SCB|1|5|C|1446
8SCB|1|5|C|1447
8SCB|1|5|G|1448

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain F

60S ribosomal protein L7

Chain Q

Ribosomal protein L18