HL_8SCB_026

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_026 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.1335

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8SCB|1|5|G|1561
8SCB|1|5|G|1562
8SCB|1|5|A|1563
8SCB|1|5|A|1564
8SCB|1|5|A|1565
8SCB|1|5|C|1566

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain LL

uS17

Chain NN

uS15

Chain p

eL43