3D structure

PDB id
8SCB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Terminating ribosome with SRI-41315
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CAUGGAAGUCG
Length
11 nucleotides
Bulged bases
8SCB|1|5|A|1984
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8SCB_034 not in the Motif Atlas
Homologous match to HL_8C3A_027
Geometric discrepancy: 0.4221
The information below is about HL_8C3A_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

8SCB|1|5|C|1978
8SCB|1|5|A|1979
8SCB|1|5|U|1980
8SCB|1|5|G|1981
8SCB|1|5|G|1982
8SCB|1|5|A|1983
8SCB|1|5|A|1984
8SCB|1|5|G|1985
8SCB|1|5|U|1986
8SCB|1|5|C|1987
8SCB|1|5|G|1988

Current chains

Chain 5
28S_rRNA

Nearby chains

Chain ii
Eukaryotic peptide chain release factor subunit 1
Chain t
60S ribosomal protein L12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2382 s