HL_8SCB_050

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

8SCB|1|5|C|2814

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_050 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0876

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8SCB|1|5|U|2810
8SCB|1|5|G|2811
8SCB|1|5|A|2812
8SCB|1|5|A|2813
8SCB|1|5|C|2814
8SCB|1|5|A2M|2815
8SCB|1|5|G|2816

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain R

Ribosomal protein L19