HL_8SCB_059

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8SCB|1|5|A|3876, 8SCB|1|5|A|3877, 8SCB|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_059 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0685

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8SCB|1|5|G|3873
8SCB|1|5|G|3874
8SCB|1|5|G|3875
8SCB|1|5|A|3876
8SCB|1|5|A|3877
8SCB|1|5|C|3878
8SCB|1|5|G|3879
8SCB|1|5|G|3880
8SCB|1|5|G|3881
8SCB|1|5|C|3882

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain e

eL32