HL_8SCB_070
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGU(PSU)CA(PSU)AG
- Length
- 9 nucleotides
- Bulged bases
- 8SCB|1|5|U|4419, 8SCB|1|5|A|4422
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SCB_070 not in the Motif Atlas
- Homologous match to HL_5TBW_061
- Geometric discrepancy: 0.3771
- The information below is about HL_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8SCB|1|5|C|4417
8SCB|1|5|G|4418
8SCB|1|5|U|4419
8SCB|1|5|PSU|4420
8SCB|1|5|C|4421
8SCB|1|5|A|4422
8SCB|1|5|PSU|4423
8SCB|1|5|A|4424
8SCB|1|5|G|4425
Current chains
- Chain 5
- 28S_rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain ii
- Eukaryotic peptide chain release factor subunit 1
- Chain m
- Ubiquitin A-52 residue ribosomal protein fusion product 1
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