HL_8SCB_078

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

8SCB|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_078 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1591

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8SCB|1|5|C|4906
8SCB|1|5|G|4907
8SCB|1|5|G|4908
8SCB|1|5|A|4909
8SCB|1|5|A|4910
8SCB|1|5|A|4911
8SCB|1|5|G|4912
8SCB|1|5|G|4913
8SCB|1|5|G|4914
8SCB|1|5|G|4915

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

uL13