HL_8SP9_004

3D structure

PDB id

8SP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Coxsackievirus B3 (CVB3) Cloverleaf RNA with tRNA scaffold

Experimental method

X-RAY DIFFRACTION

Resolution

2.92 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_15422.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

104

Unit IDs

8SP9|1|C|G|130
8SP9|1|C|U|131
8SP9|1|C|U|132
8SP9|1|C|C|133
8SP9|1|C|A|134
8SP9|1|C|A|135
8SP9|1|C|G|136
8SP9|1|C|U|137
8SP9|1|C|C|138

Current chains

Chain C

tRNA scaffold,CVB3 Cloverleaf RNA

Nearby chains