HL_8SUP_014

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8SUP|1|2|G|821, 8SUP|1|2|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SUP_014 not in the Motif Atlas

Homologous match to HL_9PN5_092

Geometric discrepancy: 0.1334

The information below is about HL_9PN5_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8SUP|1|2|U|820
8SUP|1|2|G|821
8SUP|1|2|U|822
8SUP|1|2|U|823
8SUP|1|2|C|824
8SUP|1|2|A|825
8SUP|1|2|A|826
8SUP|1|2|A|827
8SUP|1|2|G|828

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain K

uS4

Chain Z

eS24