HL_8SUP_018

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8SUP|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SUP_018 not in the Motif Atlas

Homologous match to HL_9H3G_095

Geometric discrepancy: 0.2246

The information below is about HL_9H3G_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8SUP|1|2|G|1054
8SUP|1|2|A|1055
8SUP|1|2|U|1056
8SUP|1|2|C|1057
8SUP|1|2|A|1058
8SUP|1|2|G|1059
8SUP|1|2|A|1060
8SUP|1|2|U|1061
8SUP|1|2|A|1062
8SUP|1|2|C|1063
8SUP|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

EMCV mRNA

Chain P

Small ribosomal subunit protein uS11

Chain i

Transfer RNA; tRNA

Chain j

Eukaryotic translation initiation factor 2 subunit 1