HL_9H3G_095

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

9H3G|1|h1|U|1005

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9H3G|1|h1|G|998
9H3G|1|h1|A|999
9H3G|1|h1|PSU|1000
9H3G|1|h1|C|1001
9H3G|1|h1|A|1002
9H3G|1|h1|G|1003
9H3G|1|h1|A|1004
9H3G|1|h1|U|1005
9H3G|1|h1|A|1006
9H3G|1|h1|C|1007
9H3G|1|h1|C|1008

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain B1

Messenger RNA (poly-U)

Chain Ma

Small ribosomal subunit protein eS26y

Chain Ua

Small ribosomal subunit protein uS11y

Chain W2

Transfer RNA; tRNA