HL_8SUP_025

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8SUP|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SUP_025 not in the Motif Atlas

Homologous match to HL_9PN5_104

Geometric discrepancy: 0.1614

The information below is about HL_9PN5_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

8SUP|1|2|G|1366
8SUP|1|2|U|1367
8SUP|1|2|U|1368
8SUP|1|2|A|1369
8SUP|1|2|A|1370
8SUP|1|2|U|1371
8SUP|1|2|U|1372
8SUP|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17