HL_8SUP_035
3D structure
- PDB id
- 8SUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SUP_035 not in the Motif Atlas
- Homologous match to HL_4V9Q_214
- Geometric discrepancy: 0.141
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
8SUP|1|i|G|30
8SUP|1|i|C|31
8SUP|1|i|C|32
8SUP|1|i|C|33
8SUP|1|i|A|34
8SUP|1|i|U|35
8SUP|1|i|A|36
8SUP|1|i|A|37
8SUP|1|i|C|38
Current chains
- Chain i
- Met-tRNAiMet
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- EMCV mRNA
- Chain A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain R
- uS9
- Chain j
- Eukaryotic translation initiation factor 2 subunit 1
Coloring options: