HL_8SYL_046

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8SYL|1|A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SYL_046 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0797

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8SYL|1|A|G|1949
8SYL|1|A|G|1950
8SYL|1|A|U|1951
8SYL|1|A|A|1952
8SYL|1|A|A|1953
8SYL|1|A|G|1954
8SYL|1|A|U|1955
8SYL|1|A|U|1956
8SYL|1|A|C|1957

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA