HL_8SYL_056

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8SYL|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SYL_056 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0612

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8SYL|1|A|U|2404
8SYL|1|A|G|2405
8SYL|1|A|A|2406
8SYL|1|A|A|2407
8SYL|1|A|U|2408
8SYL|1|A|G|2409
8SYL|1|A|G|2410
8SYL|1|A|A|2411
8SYL|1|A|A|2412
8SYL|1|A|G|2413

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L15