HL_8SYL_084

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SYL_084 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.0651

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8SYL|1|a|C|726
8SYL|1|a|G|727
8SYL|1|a|A|728
8SYL|1|a|A|729
8SYL|1|a|G|730
8SYL|1|a|G|731

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S15

Chain r

30S ribosomal protein S18

Chain u

30S ribosomal protein S21