HL_8SYL_090

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGGG

Length

7 nucleotides

Bulged bases

8SYL|1|a|U|1030, 8SYL|1|a|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SYL_090 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2385

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8SYL|1|a|C|1028
8SYL|1|a|U|1029
8SYL|1|a|U|1030
8SYL|1|a|C|1031
8SYL|1|a|G|1032
8SYL|1|a|G|1033
8SYL|1|a|G|1034

Current chains

Chain a

16S Ribosomal RNA

Nearby chains